diplomat deeplabcut convert_results

Summary

Convert DeepLabCut tracking results (.h5 file) to a csv file for easier introspection and analysis.

Usage

diplomat deeplabcut convert_results [-h] --config FILE --videos
                                           [FILE, ...]|FILE [--shuffle INT]
                                           [--training_set_index INT]
                                           [--tracker STR] [--video_type STR]

Options

usage: diplomat deeplabcut convert_results [-h] --config FILE --videos
                                           [FILE, ...]|FILE [--shuffle INT]
                                           [--training_set_index INT]
                                           [--tracker STR] [--video_type STR]

Convert DeepLabCut tracking results (.h5 file) to a csv file for easier
introspection and analysis.

optional arguments:
  -h, --help            show this help message and exit
  --config FILE, -c FILE
                        The path to the config.yaml file for the project.
  --videos [FILE, ...]|FILE, -v [FILE, ...]|FILE
                        A single video or list of videos to convert the
                        tracking results of, passed in order to modify.
  --shuffle INT, -s INT
                        The shuffle index of the model used to track the
                        video. Defaults to 1.
  --training_set_index INT, -tsi INT
                        The training index of the model used. Defaults to 0.
  --tracker STR, -t STR
                        String, the extension of the deeplabcut tracker used,
                        used to find the h5 file. Doesn't need to be set for
                        DIPLOMAT files.
  --video_type STR, -vt STR
                        An optional video extension to limit the videos to
                        videos with the specified extension if a directory is
                        passed to the 'videos' parameter.